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 | Acesso ao texto completo restrito à biblioteca da Embrapa Suínos e Aves. Para informações adicionais entre em contato com cnpsa.biblioteca@embrapa.br. |
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Registro Completo |
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Biblioteca(s): |
Embrapa Suínos e Aves. |
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Data corrente: |
30/10/2020 |
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Data da última atualização: |
30/10/2020 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
HAACH, V.; GAVA, D.; CANTAO, M. E.; SCHAEFER, R. |
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Afiliação: |
VANESSA HAACH, UFRGS; DANIELLE GAVA, CNPSA; MAURICIO EGIDIO CANTAO, CNPSA; REJANE SCHAEFER, CNPSA. |
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Título: |
Evaluation of two multiplex RT-PCR assays for detection and subtype differentiation of Brazilian swine influenza viruses. |
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Ano de publicação: |
2020 |
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Fonte/Imprenta: |
Brazilian Journal of Microbiology, v. 51, n. 3, p. 1447-1451, Sep 2020. |
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DOI: |
https://doi.org/10.1007/s42770-020-00250-z |
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Idioma: |
Inglês |
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Conteúdo: |
Abstract: Influenza A virus (IAV) subtypes H1N1, H1N2, and H3N2 are endemic in swine herds in most pork producing countries; however, the viruses circulating in different geographic regions are antigenically and genetically distinct. In this sense, the availability of a rapid diagnostic assay to detect locally adapted IAVs and discriminate the virus subtype in clinical samples from swine is extremely important for monitoring and control of the disease. This study describes the development and validation of a multiplex RT-PCR assay for detection and subtyping of IAV from pigs. The analytical and diagnostic specificity of the assays was 100% (94.3-100.0, CI 95%), and the limit of detection was 10-3 TCID50/mL. A total of 100 samples (IAV isolates and clinical specimens) were tested, and the virus subtype was determined for 80 samples (80%; 71.1-86.7, CI 95%). From these, 50% were H1N1, 22.5% were H1N2, and 7.5% were H3N2. Partial subtyping was determined for 8.75% samples (H1pdmNx and HxN2). Additionally, mixed infections with two virus subtypes (H1N2 + H3N2 and H1N1pdm + H1pdmN2; 2.5%) and reassortant viruses (H1pdmN2, 6.25%; and H1N1hu, 2.5%) were detected by the assay. A rapid detection of the most prevalent IAV subtypes and lineages in swine is provided by the assays developed here, improving the IAV diagnosis in Brazilian laboratories, and contributing to the IAV monitoring. |
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Palavras-Chave: |
Multiplex RT-PCR; RT-PCR multiplex; Subtipagem; Vírus Influenza. |
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Thesagro: |
Diagnostico; Suíno. |
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Thesaurus Nal: |
Disease diagnosis; Influenza A virus; Polymerase chain reaction; Swine. |
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Categoria do assunto: |
-- |
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Marc: |
LEADER 02291naa a2200289 a 4500
001 2126156
005 2020-10-30
008 2020 bl uuuu u00u1 u #d
024 7 $ahttps://doi.org/10.1007/s42770-020-00250-z$2DOI
100 1 $aHAACH, V.
245 $aEvaluation of two multiplex RT-PCR assays for detection and subtype differentiation of Brazilian swine influenza viruses.$h[electronic resource]
260 $c2020
520 $aAbstract: Influenza A virus (IAV) subtypes H1N1, H1N2, and H3N2 are endemic in swine herds in most pork producing countries; however, the viruses circulating in different geographic regions are antigenically and genetically distinct. In this sense, the availability of a rapid diagnostic assay to detect locally adapted IAVs and discriminate the virus subtype in clinical samples from swine is extremely important for monitoring and control of the disease. This study describes the development and validation of a multiplex RT-PCR assay for detection and subtyping of IAV from pigs. The analytical and diagnostic specificity of the assays was 100% (94.3-100.0, CI 95%), and the limit of detection was 10-3 TCID50/mL. A total of 100 samples (IAV isolates and clinical specimens) were tested, and the virus subtype was determined for 80 samples (80%; 71.1-86.7, CI 95%). From these, 50% were H1N1, 22.5% were H1N2, and 7.5% were H3N2. Partial subtyping was determined for 8.75% samples (H1pdmNx and HxN2). Additionally, mixed infections with two virus subtypes (H1N2 + H3N2 and H1N1pdm + H1pdmN2; 2.5%) and reassortant viruses (H1pdmN2, 6.25%; and H1N1hu, 2.5%) were detected by the assay. A rapid detection of the most prevalent IAV subtypes and lineages in swine is provided by the assays developed here, improving the IAV diagnosis in Brazilian laboratories, and contributing to the IAV monitoring.
650 $aDisease diagnosis
650 $aInfluenza A virus
650 $aPolymerase chain reaction
650 $aSwine
650 $aDiagnostico
650 $aSuíno
653 $aMultiplex RT-PCR
653 $aRT-PCR multiplex
653 $aSubtipagem
653 $aVírus Influenza
700 1 $aGAVA, D.
700 1 $aCANTAO, M. E.
700 1 $aSCHAEFER, R.
773 $tBrazilian Journal of Microbiology$gv. 51, n. 3, p. 1447-1451, Sep 2020.
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Registro original: |
Embrapa Suínos e Aves (CNPSA) |
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| Registros recuperados : 146 | |
| 6. |  | SILVA, M. L. B. da; CANTAO, M. E.; MEZZARI, M. P.; MA, J.; NOSSA, C. W. Assessment of bacterial and archaeal community structure in swine wastewater treatment processes. In: SIMPÓSIO INTERNACIONAL SOBRE GERENCIAMENTO DE RESÍDUOS AGROPECUÁRIOS E AGROINDUSTRIAIS, 4., 2015, Rio de Janeiro, RJ. Anais... Brasília: Embrapa, 2015.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Suínos e Aves. |
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| 9. | | PEIXOTO, J. de O.; IBELLI, A. M. G.; CANTAO, M. E.; LEDUR, M. C. Condronecrose bacteriana com osteomielite (BCO): um problema subestimado na avicultura de corte. Guia Gessulli da Avicultura e Suinocultura Industrial, Itu, ed. 266, ano 38, n. 5, p. 24-30, 2015.| Tipo: Artigo de Divulgação na Mídia |
| Biblioteca(s): Embrapa Suínos e Aves. |
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| 10. | | SCHAEFER, R.; GAVA, D.; HAACH, V.; CANTAO, M. E.; ZANELLA, J. R. C. Continuous circulation of human-origin seasonal influenza A viruses in swine in Brazil. Virus Reviews & Research, Brasília, DF, v. 20, p. 242, Oct. 2015. Supplement 1, ref. VV301. Edição dos Resumos do XXVI Brazilian Congress of Virology, X Mercosur Meeting of Virology, Florianóplis, SC, Oct. 2015.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Suínos e Aves. |
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| 12. | | MEZZARI, M. P.; SILVA, M. L. B. da; CANTAO, M. E.; MA, J.; NOSSA, C. W. Insights of putative pathogens reduction from swine wastewater treatment processes through 16s rDNA pyrosequencing analyses. In: SIMPÓSIO INTERNACIONAL SOBRE GERENCIAMENTO DE RESÍDUOS AGROPECUÁRIOS E AGROINDUSTRIAIS, 4., 2015, Rio de Janeiro, RJ. Anais... Brasília: Embrapa, 2015.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Suínos e Aves. |
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| 13. | | TUPINAMBA, D.; CANTAO, M. E.; COSTA, O. Y.; BERGMANN, J. C.; KYAW, C.; QUIRINO, B. F. Impact of oil palm fatal yellowing on Amazon soil archaeal community assessed by high-throughput sequencing. In: SYMPOSIUM ON BIOTECHNOLOGY FOR FUELS AND CHEMICALS, 37., 2015, San Diego, California. [Resumos ...] Fairfax: Society for Industrial Microbiology and Biotechnology, 2015. Resumo T141| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Agroenergia. |
|  |
| 14. | | CANTAO, M. E.; PISSETTI, C.; KICH, J. D.; ZARTH, S.; MORES, N.; CARDOSO, M. Intestinal microbiota profile of pigs with and without in-feed antibiotics. In: INTERNATIONAL PLANT & ANIMAL GENOME, 23., 2015, San Diego, CA. Abstracts? San Diego, 2015.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Suínos e Aves. |
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| 15. | | SCHAEFER, R.; MORES, N.; GAVA, D.; CANTAO, M. E.; ZANELLA, J. R. C. Long-term circulation of influenza A viruses in swine in Brazil. In: Journal of the Brazilian Society for Virology, Ribeirão Preto, v. 19, p. 53-54, 2014. Suppl. 2. Edição dos anais do 25º. Brazilian Congress of Virology e 9º. Mercosur Meeting of Virology, Ribeirão Preto, set./out, 2014.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Suínos e Aves. |
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| 16. | | SCHAEFER, R.; GAVA, D.; NELSON, M. I.; HAACH, V.; ZANELLA, J. R. C.; CANTAO, M. E. Genetic characterization of influenza viruses circulating within Brazilian swine between 2009 and 2016. In: BRAZILIAN CONGRESS OF VIROLOGY, 27.; MERCOSUR MEETING OF VIROLOGY,11., 2016, Pirenópolis. Abstracts: posters: oral presentation. Brasília, DF: SBV, 2016. Publicado na Virus Reviews and Research, Brasília, n. 20, v. 2, p. 22-23, 2016.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Suínos e Aves. |
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| 18. | | SCHAEFER, R.; GAVA, D.; HAACH, V.; ZANELLA, J. R. C.; CANTAO, M. E. Novel H1N2 swine influenza virus reassortant strain derived from the pandemic H1N1/2009 virus. In: CONGRESSO BRASILEIRO DE VIROLOGIA, 29.; ENCONTRO DE VIROLOGIA DO MERCOSUL, 13., 2018, Gramado. Resumos... Brasília: SBV, 2018.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Suínos e Aves. |
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| 19. | | SCHAEFER, R.; GAVA, D.; HAACH, V.; CANTAO, M. E.; NELSON, M. I. Novel human-like H1N1 swine influenza virus with the six internal genes derived from H1N1/2009 virus. In: CONGRESSO BRASILEIRO DE VIROLOGIA, 28.; ENCONTRO DE VIROLOGIA DO MERCOSUL, 12., 2017, Belo Horizonte. Trabalho pôsteres... Brasília: SBV, 2017.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Suínos e Aves. |
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| Registros recuperados : 146 | |
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| Nenhum registro encontrado para a expressão de busca informada. |
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